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Evolution & Development

Wiley

Preprints posted in the last 90 days, ranked by how well they match Evolution & Development's content profile, based on 18 papers previously published here. The average preprint has a 0.01% match score for this journal, so anything above that is already an above-average fit.

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Whole body elongation drives coordinated vertebral shape evolution in Lake Malawi cichlid fishes

Bucklow, C. V.; Ugboma, H.; Criswell, K. E.; Benson, R.; Verd, B.

2026-05-13 evolutionary biology 10.64898/2026.05.09.723978 medRxiv
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Understanding how anatomical structures evolve requires disentangling the roles of integration and modularity in shaping morphological variation. The vertebral column, a serially repeated and regionally differentiated structure, provides a powerful system for investigating these processes. Here, we examine how vertebral morphology evolves in relation to whole-body elongation across the adaptive radiation of Lake Malawi cichlid fishes. We tested for evolutionary integration between the precaudal and caudal domains, as well as assessed the contributions of vertebral count, centrum shape, and intervertebral spacing on body elongation. We find strong evolutionary integration between precaudal and caudal vertebral shape, with both vertebral shapes varying along shared axes of multivariate shape change. Despite this, precaudal and caudal vertebral counts evolve independently, indicating a decoupling between the evolution of identity and morphology. Whole-body elongation is significantly associated with coordinated changes in vertebral and rib morphology, including proportional increases in centrum size, posterior displacement of neural and haemal spines, and increased rib curvature. In contrast, centrum elongation and intervertebral spacing do not independently explain body elongation beyond vertebral counts. These results demonstrate that body elongation in cichlids necessitates integrated, multivariate changes in axial morphology. Our findings highlight the importance of morphological integration in facilitating coordinated evolutionary responses in anatomical systems.

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Scaling and ecomorphology of lagomorph body shape and appendicular skeleton

Huizenga, C.; Brice, N.; Law, C. J.

2026-05-12 evolutionary biology 10.64898/2026.05.07.723560 medRxiv
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The diversity of body shapes is one of the most prominent features of phenotypic variation in mammals. Yet, mammalian body shapes are poorly quantified and the underlying components contributing to its diversity as well as its relationship to other components of the skeleton are rarely tested. Here, we use lagomorphs (hares, rabbits and pikas) as a model system to (1) investigate which components of the skeleton contributed the most to body shape diversity, (2) examine the relationships between body shape and relative limb lengths, and (3) test how body size, ecotype, burrowing behavior, and locomotor mode influenced variation in lagomorph body shape and appendicular morphology. We quantified the body shape and functional proxies of the appendicular skeleton in 40 lagomorph species from osteological specimens held at museum collections. Using phylogenetic comparative methods, we found the relative length of the ribs and elongation or shortening of the thoracic and lumbar regions contributed the most to body shape evolution across lagomorphs. Second, we found that only leporids (hares and rabbits) exhibited a significant relationship between limb length and body shape, where more elongate species exhibit relatively shorter forelimbs and hindlimbs. Lastly, we found that models incorporating body size were the best predictors of lagomorph body shape and the majority of the appendicular traits, whereas models incorporating burrowing behavior and locomotor mode were largely poor fits. Broadly, these results indicate that larger lagomorphs tend to exhibit more robust body shapes with longer, more gracile forelimbs, whereas smaller lagomorphs tend to exhibit more elongate body shapes with shorter, more robust forelimbs. Overall, this work contributes to the growing understanding of mammalian body shape evolution and demonstrates the importance of not omitting body size in ecomorphological analyses.

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Segmentation gene expression and function in Vanessa cardui, an emerging model for Lepidoptera

Gutierrez Ramos, X.; Reding, K.; Pick, L.

2026-06-03 evolutionary biology 10.64898/2026.06.01.729330 medRxiv
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Although all insects are segmented, the genes that control this process vary across species. Many of the pair-rule (PR) genes that direct segment formation in Drosophila are similarly utilized in other holometabolous insects, but more distantly related species use different genes for PR-patterning. Previously, we showed that Lepidoptera lack a highly conserved PR-gene, paired. Here, we used the painted lady butterfly Vanessa cardui as a lepidopteran model to explore the expression and function of PR-genes in this large clade of moths and butterflies. Orthologs of four Drosophila PR-genes are expressed in PR-like stripes and at least one displays PR-like function. Neither of the two genes that have PR-function in Hemiptera but not in Drosophila have PR-roles in Vanessa. Rather, the hemipteran PR-gene Blimp1 functions in a novel fashion in abdominal segmentation in Vanessa. Thus, while butterflies appear to share PR-patterning mechanisms with other insects, they utilize only a subset of the Drosophila PR-gene orthologs and have not taken on hemipteran PR-orthologs for this process. These findings suggest extensive rewiring of the segmentation gene regulatory network in Lepidoptera.

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Development, dimorphism, and divergence of the oral dentition in threespine sticklebacks (Gasterosteus aculeatus)

Mendizabal, A.; Miller, C. T.

2026-05-19 developmental biology 10.64898/2026.05.15.725320 medRxiv
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How morphology forms during development and changes during evolution remain major questions in biology. In vertebrates, teeth have long served as model systems to address these questions. In threespine stickleback fish (Gasterosteus aculeatus), repeated and convergent increases in pharyngeal tooth number in derived freshwater sticklebacks occur, suggesting increased tooth number is adaptive in freshwater environments, likely due to a diet of larger prey in freshwater. Whether changes in oral tooth patterning also occur in freshwater sticklebacks was unknown. Here we describe oral tooth number and patterning in a dense developmental time course of lab-reared ancestral marine and derived freshwater fish. We address three major questions. First, is the spatial sequence of early oral tooth formation invariant as we previously described for the pharyngeal dentition? Second, is oral tooth patterning in the upper and lower jaw sexually dimorphic, and if so, when during development does this dimorphism arise? Third, have freshwater fish evolved increases in oral tooth number? We find that (1) unlike the pharyngeal dentition, the oral jaw early spatial sequence is variable, especially in the lower jaw (2) sexual dimorphism in both oral jaws arises at the late juvenile stage with males having more teeth and (3) freshwater fish have evolved more oral teeth similar to the evolved tooth gain in the pharyngeal jaw. Together our morphological descriptions advance the stickleback oral jaw as a model system to study how morphology forms during development and evolves in nature.

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Fast-annealed 3'-extended dsDNA templates facilitate efficient epitope-tag knock-in in emerging model insects

Nakamura, T.; Ando, T.; Matsuoka, Y.; Niimi, T.

2026-05-20 bioengineering 10.1101/2025.06.20.660821 medRxiv
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CRISPR-Cas genome editing toolkits have expanded the scope of genetic studies in various emerging model organisms. However, their applications are limited mainly to knockout experiments due to technical difficulties in establishing knock-in strains, which enable in vivo molecular tagging-based experiments. Here, we investigated knock-in strategies in the harlequin ladybug Harmonia axyridis, a model insect for evolutionary developmental biology, which shows more than 200 color pattern variations within a species. We tested several knock-in strategies using synthetic DNA templates. We found that ssDNA templates generated founder knock-in strains efficiently (2.5-11%), whereas the 5 regions of ssDNA templates were frequently deleted when the insert length exceeded [~]40 bases. To overcome this limitation, we designed several 3 extended DNA templates. Fast-annealed 3-extended double-stranded DNA templates, which were designed for tagging endogenous proteins with epitope tags, showed high founder generation efficiency (9.9-20.9%) and accuracy (30.8-85.7%). This strategy is also applicable to the two-spotted cricket Gryllus bimaculatus, suggesting that the fast-annealed 3-extended dsDNA template is a versatile DNA template for generating knock-in strains in emerging model insects for developmental genetic studies. Summary statementFast-annealed 3-extended dsDNA templates facilitate efficient CRISPR-Cas9-mediated knock-in in emerging model insects.

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The retinal pigment epithelium undergoes anisotropic stretching and nuclear size scaling during optic cup morphogenesis in a fish model.

Agnes, F.; Pain, M.; Verite, D.; Zia, P.; Giry, E.; Torres-Paz, J.; Retaux, S.

2026-07-13 developmental biology 10.64898/2026.07.12.737769 medRxiv
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The morphogenesis of the optic cup provides a robust system for studying how two apposed epithelial monolayers with distinct properties fold and stretch in a coordinated manner to form the primordial eye. While much research has been conducted on the temporal dynamics of retinal neuroepithelium invagination, the spatial organization and stretching of the retinal pigment epithelium has received less attention. The fish species Astyanax mexicanus offers a unique model to examine the mechanisms of optic tissue morphogenesis through a comparative lens, as it exhibits natural variation in eye development between its river-dwelling and cave-adapted morphs. Using quantitative 3D imaging of optic cups from both morphs, we found that RPE morphogenesis involves transient, graded, and anisotropic cell stretching that patterns the epithelium during optic cup shaping. Analyses of RPE nuclear spacing and cell morphology showed that tissue stretching gradually increases along the proximo-distal axis, suggesting maximal tension in the elongated distal RPE cells aligned along the optic cup meridians. Furthermore, nuclear volumes and apical surface areas of RPE cells scaled spatially along the same axis, independently of endoreplication. In the cavefish natural mutant, RPE expansion was delayed by over six hours and proximal stretching exhibited altered isotropy, indicative of disrupted temporal coordination and suggesting modified mechanical constraints. These results demonstrate that RPE morphogenesis is a highly heterogeneous process from a spatiotemporal perspective, offering new insights into the study of the biomechanical principles of eye development in vertebrates. Summary statementThis study reveals the emergence of cell morphology gradients within the retinal pigment epithelium during morphogenesis of the eye in two distinct populations of the same species of fish.

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Comparative morphology of silk-spinning systems in amphipods

McKim, S.; Turner, T. L.

2026-05-12 evolutionary biology 10.64898/2026.05.07.723571 medRxiv
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Silk glands have been found in two groups of amphipods: the Corophiida and the Ampeliscidae. The silk glands in Ampeliscidae, however, have yet to be examined in detail. Here we report, for the first time, the morphology and distribution of pereopodal glands in the Ampeliscidae, in non-thread producing Synopiidae, and in the Paragammaropsidae. In the Ampeliscidae we found two gland types distributed throughout all pereopods which have the ability to create threads. Pereopods three and four have additional silk extrusion morphology at the tip of the dactylus in which silk is transformed into semi-cylindrical threads used for building domiciles. Synopiid outgroup species have one of the gland types but lack silk extrusion morphology. Using ancestral state reconstruction analysis, we find that glands in the Synopiidae are likely ancestral and hypothesize that silk glands in Ampeliscidae are derived from these ancestral glands. Silk-spinning pereopods in the Paragammaropsidae had similarities with both Corophiida and Ampeliscidae but had distinctions. Ampeliscidae silk-spinning systems bear surprising resemblance to the Corophiida which presents one to reconsider the taxonomic placement of Ampeliscidae and the origins of silk-spinning in amphipods. This is the first comprehensive study on the glandular systems of Ampeliscidae, Synopiidae, and Paragammaropsidae using advanced microscopy, providing pertinent morphological data to the study of arthropod silk gland evolution and complex traits.

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Macroevolutionary shifts in post-hatching ontogeny and the origin of craniofacial disparity in fowl (Aves: Galloanserae)

Arnaout, B.; Navalon, G.; Plateau, O.; Lautenschlager, S.; Steventon, B.; Field, D. J.

2026-06-12 evolutionary biology 10.64898/2026.06.12.731877 medRxiv
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Anseriformes (waterfowl) and Galliformes (landfowl) are among the worlds most recognisable groups of birds, together comprising the clade Galloanserae. Despite their close evolutionary relationship, the skulls of adult anseriforms and galliforms exhibit strikingly distinct morphologies, the developmental basis and evolutionary history of which is poorly understood. To illuminate the developmental and evolutionary underpinnings of cranial disparity between and within these major extant bird clades, we quantitatively investigated ontogenetic changes in cranial morphology across galloanseran phylogenetic diversity, focusing on the previously unexplored post-hatching interval during which adult morphology takes shape. Our results reveal the combined effects of multiple heterochronic shifts early in galloanseran evolutionary history including anseriform hypermorphosis, along with influential non-heterochronic changes leading to substantially more disparate ontogenetic trajectories--and greater cranial variability--in anseriforms than galliforms. Key galloanseran fossils help clarify the polarity of evolutionary shifts in cranial development through galloanseran phylogenetic history and demonstrate that extant galliform cranial morphology is more constrained and retains a more plesiomorphic morphology than that of anseriforms. Our work helps illuminate the developmental basis of the iconic differences in cranial form between waterfowl and landfowl and illustrates the importance of broad phylogenetic and ontogenetic sampling for clarifying patterns of post-hatching developmental divergence among major vertebrate clades.

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Genomics Analysis Illuminates Morphology, Ecology, Phenology and Distribution of Two Cryptic Atrytonopsis Skippers (Hesperiidae: Hesperiinae)

Cary, S. J.; Doneski, S. M.; Zhang, J.; Cong, Q.; Grishin, N. V.

2026-06-19 evolutionary biology 10.64898/2026.06.16.732465 medRxiv
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The Hesperiine genus Atrytonopsis Godman, 1900, occurs broadly across the American Southwest. Atrytonopsis margarita (Skinner, 1913) and Atrytonopsis python (W. H. Edwards, 1882) have look-alike appearances, concurrent flights, and geographic distributions which converge in New Mexico. Their similar wing markings and intertwined taxonomic history has made it challenging to fully understand the identity and occurrence of each. Burns (2015) revealed differences in genitalia, clarifying that they are distinct species. Genomic DNA analysis of more than 100 specimens now illuminates their genetic uniqueness, phylogenetic relationship, field identification challenges and details of their geographic distributions.

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Distinct positional identity at the center of the caudal fin establishes forked shape

Surette, E.; Gablemann, J.; Backus, K.; Nguyen, T.; McKenna, D.; Uribe Calampa, C. S.; McMenamin, S.

2026-05-19 developmental biology 10.64898/2026.05.16.725681 medRxiv
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The morphogenesis of complex vertebrate appendages requires precise regulation of growth, governed by distinct positional identities. The zebrafish caudal fin achieves a symmetrical, forked morphology through the regional specialization of the bony rays: peripheral rays are composed of relatively long, thick segments; while the central rays are made up of shorter, thinner segments, and their overall length is restricted. This length differential establishes the definitive forked shape of the organ. We asked whether these regional morphological differences reflect distinct underlying positional identities. Transcriptomic profiling of intact tissues from adult wild-type zebrafish suggested that central rays possess unique expression profiles, distinct from those of peripheral rays. We previously identified a treatment during embryogenesis that allows excess growth in the central rays, creating a truncate fin shape in adults-we asked whether this novel fin shape was caused by a peripheralization of the central rays. Indeed, the central rays of truncate fins were not only longer, but were composed of longer and thicker individual segments, reminiscent of peripheral rays. Further, gene expression in the central regions of truncate backgrounds showed signatures of peripheral identity. During development of the truncate phenotype, peripheral markers became expressed in more central domains of the growing truncate caudal fin, and in the supportive endoskeleton, the central hypural diastema was lost from the earliest stages. Ultimately, our results demonstrate how adult morphologies may be altered by shifts in positional identities. These findings clarify the anatomical patterning and molecular profiles that underlie regional specialization during caudal fin development.

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3-D Ontogenetic Staging Atlas of the Epaulette Shark Hemiscyllium ocellatum, a Laboratory Model for Shark Development

Dale, R. E.; Tulenko, F. J.; Hersey, L.; Currie, P. D.

2026-04-28 developmental biology 10.64898/2026.04.27.721166 medRxiv
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Chondrichthyans (cartilaginous fishes) form the sister group to osteichthyans (bony fishes) and therefore occupy a key phylogenetic position for comparative studies of early vertebrate evolution. Despite their importance, chondrichthyan development remains understudied relative to established model systems such as mouse, chick, and zebrafish, in part because of limited embryo accessibility and the lack of standardized laboratory resources for rearing. Here, we present the epaulette shark Hemiscyllium ocellatum, a small, oviparous shark as a tractable laboratory system for studying shark development. We provide an overview of epaulette shark husbandry requirements and generate a comprehensive micro-computed tomography imaging series spanning embryonic development through hatching. This dataset provides a three-dimensional anatomical atlas of development for a representative chondrichthyan species. By preserving whole embryos in three dimensions, micro-CT imaging enables developmental morphologies to be visualized at high resolution and in near-native anatomical context. Together with the recently published epaulette shark genome, this developmental atlas helps establish the Epaulette shark for comparative anatomical, developmental, and genomic studies.

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Characterising differential gene expression and alternative splicing in a sex reversing skink, Bassiana duperreyi

Hanrahan, B. J.; Chang, J. K.; Dissanayake, D. S. B.; Lister, N. C.; Georges, A.; Waters, P. D.

2026-06-18 genomics 10.64898/2026.06.15.731768 medRxiv
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In some reptiles, genetic and environmental sex determination interact whereby extreme incubation temperatures override genetic sex determination (GSD) to produce sex-reversed individuals. In one lizard with temperature-influenced GSD, the central bearded dragon, intron retention in the histone-modifier genes Kdm6b and Jarid2 has been implicated as a candidate signal linking temperature to sex. Equivalent intron retention is also present in two species with temperature-dependent sex determination, the red-eared slider turtle and the American alligator. The eastern three-lined skink, Bassiana duperreyi, represents another lizard with temperature induced sex reversal. It has an XY sex determination system in which low temperature incubation causes sex reversal of XX embryos to produce phenotypic males. In this study, we performed splice-aware analysis of RNA sequencing from hatchling brains of the three-lined skink. We investigated differences in alternative splicing and gene expression between the three sex conditions: XY males (XYm), XX females (XXf), and sex-reversed XX males (XXm). Sex reversal specific intron retention was observed in the gene, Ttll7, which only occurred in XXm and not in XYm or XXf. Intron retention in Ttll7 could alter the function of the encoded protein, a tubulin polyglutamylase, but its effect on sex reversal here is unknown. In addition, intron retention in the histone-modifier genes Jarid2 and Kdm6b occurred in all conditions. The presence of Kdm6b and Jarid2 intron retention in all sex conditions suggests that the pattern of intron retention in sex reversal in the eastern three-lined skink is distinct compared to the bearded dragon. We conclude that a different molecular pathway for sex reversal is induced in the three-lined skink, the details of which remain elusive.

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Patterns of molecular conservation along tooth development are only partly shaped by evolutionary pressures on tooth

Ganofsky, J.; Estevez-Villar, M.; Mouginot, M.; Moretti, S.; Nyamari, M.; Robinson-Rechavi, M.; Pantalacci, S.; Semon, M.

2026-06-19 evolutionary biology 10.64898/2026.06.19.733320 medRxiv
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Although it is well established that certain stages of development are molecularly more conserved than others, the reasons for this phenomenon remain largely unknown. We study molecular conservation in the development of an organ, the molar, by comparing the temporal profiles of expression in mice and hamsters. We find that the cause of conservation of expression and of coding sequences changes over molar development. Gene expression levels display a classical increase of divergence as development progresses. In terms of genes expressed, the composition of early and late stages is better conserved and enriched in pleiotropic genes, yet each stage mobilizes different sets of pleiotropic genes, cell division for bud growth and secretion for tooth mineralization. Moreover similar patterns of higher divergence of gene sets and of coding sequences at mid development, are caused by different biological phenomena, in that case heterochronies and blood colonisation respectively. In conclusion, the patterns of molecular conservation in developing molars are shaped by a combination of processes intrinsic to the teeth, and by negative and positive selection on functions which are mostly extrinsic to the teeth. This is likely translatable to explain molecular conservation patterns in many other biological systems. AUTHOR SUMMARYFor species to evolve different adaptations to different life styles, their anatomy has to evolve correspondingly. This in turn implies evolution of the embryonic development of anatomical structures. Notably, tooth shape can evolve rapidly as an adaptation to different diets. Mice and hamsters are closely related rodents who yet differ in the shape of their molars, and thus in their development. In this study, we investigated why the genes active in molar development are more or less similar between the two species from early tooth bud to fully formed embryo molar. We found that early and late molar development were slow evolving, while mid-development was evolving faster. But surprisingly, this was in part due not to tooth evolution, but to the involvement of genes which are active in other processes in the body. For example an influx of immune cells also brings fast evolving immune genes. This helps us understand better the complexity of causes of apparently simple evolutionary patterns.

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Pax6-dependent patterning in an annelid informs the evolution of bilaterian nerve cords

Doderovic, J.; Kolek, M.; Zitova, A.; Kozmikova, I.; Kozmik, Z.

2026-06-27 evolutionary biology 10.64898/2026.06.27.734823 medRxiv
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Conserved dorsoventral patterning systems have been proposed as evidence for a common evolutionary origin of centralized nervous systems in Bilateria, yet functional evidence outside vertebrates and arthropods remains limited. Here, we investigated the role of pax6 in the annelid Platynereis dumerilii using a mutant carrying a 61 bp deletion in the paired-domain coding region. Loss of pax6 disrupted ventral neuroectodermal patterning at 34 hpf, causing a shift in nk2.2 expression, narrowing of the nk6 domain, and downregulation of pax3/7, while msx expression remained largely unaffected. These early patterning defects were followed by selective neuronal abnormalities at 48 hpf, including displacement of TrpH-positive serotonergic cells and loss of posterior hb9-positive motoneuron domains. By 6 dpf, additional defects were observed in TrpH, ChAT, VAChT, and nk2.2 expression, accompanied by severe disruption of ventral nerve cord morphology and loss of the characteristic rope-ladder architecture. Together, these findings identify pax6 as a key regulator linking dorsoventral progenitor patterning, neuronal subtype specification, and nervous system morphogenesis in Platynereis. Our results provide functional evidence that the conserved dorsoventral patterning network plays an essential role in annelid ventral nerve cord development and support the view that important components of bilaterian nervous system patterning predate the divergence of major animal lineages.

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Characterizing the Small Non-Coding RNA Pathways in the Invasive Zebra Mussel (Dreissena polymorpha)

Hernandez Elizarraga, V. H.; O'Brien, L. G.; Ballantyne, S.; Gohl, D. M.

2026-07-11 genomics 10.64898/2026.07.10.737777 medRxiv
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The zebra mussel (Dreissena polymorpha) is an invasive species that causes extensive economic and ecological damage. Here, we identify and characterize the key components of the small RNA (sRNA) and RNA interference (RNAi) pathways in zebra mussels. Like other mollusks, zebra mussels have extensive microRNA (miRNA) and Piwi-interacting RNA (piRNA) machinery but lack or have modified canonical factors needed to produce small interfering RNA (siRNA). Specifically, the zebra mussel Dicer sequence displays substitutions in the conserved DEAD box motif that is required for substrate processivity, and this organism also lacks some attendant accessory factors such as R2D2. We sequenced the small RNA found in both isolated somatic tissue (adductor muscle) and whole animals (including germline), and identified both conserved and novel miRNA and diverse piRNA sequences, but few endogenous siRNAs. To determine whether their remaining sRNA machinery could still be co-opted to initiate gene silencing, we injected dsRNA targeting several genes into zebra mussel adductor muscle. The injected rpn8-targeting dsRNA reduced rpn8 mRNA levels and was processed into sRNA that resemble endogenous miRNAs and piRNAs. The levels of both sRNA types correlated with mRNA knockdown, suggesting that they may act together to initiate RNAi as seen elsewhere. dsRNA targeting other genes produced variable results suggesting that particular criteria may be needed to trigger an RNAi response in this assay. Our results characterize endogenous sRNA pathways in zebra mussels, establish that dsRNA can induce RNAi, and lay the groundwork for further optimizations to establish RNAi-based genetic manipulation tools for this damaging invasive species.

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The role of stridulations during the mating of Nicrophorus vespilloides

Guggenberger, M.; Gerke, S.; Conrad, T.

2026-07-04 animal behavior and cognition 10.64898/2026.06.30.735517 medRxiv
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In many insect species, mating is coordinated through multimodal signaling, yet less obvious channels are often overlooked. In the burying beetle Nicrophorus vespilloides, chemical communication is well-documented, but the role of substrate-borne vibrational signals (stridulations) during courtship remains unknown. We investigated whether stridulation is essential for mating success through two sets of experiments. First, we found a positive correlation between the frequency of stridulations and both the number and duration of copulation events. Second, we employed a silencing experiment to test the necessity of these signals by silencing males, females, or both partners. We found no significant differences between silenced and control groups regarding the frequency or duration of physical contact and mounting events, suggesting that stridulation is not required for mate recognition or the initiation of courtship. However, the proportion of successful copulations relative to mounting events was significantly lower when females were silenced. These results suggest that while N. vespilloides relies on a redundant multimodal system that likely utilizes chemical cues to initiate mating, vibrational signals, particularly from the female, may play a critical role in facilitating successful copulation. This study provides the first evidence for the role of stridulation in the mating behavior of N. vespilloides and highlights the potential for female-mediated vibrational signaling in burying beetle courtship.

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Molecular mechanisms underlying the prepupal-instar-forming metamorphosis in black soldier fly (Hermetia illucens)

Zhang, L.; Shimoda, M.; Minakuchi, C.

2026-06-03 developmental biology 10.64898/2026.05.31.729150 medRxiv
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The black soldier fly (Hermetia illucens, Diptera) undergoes an atypical metamorphic program in which a distinct non-feeding prepupal instar precedes pupation, but its developmental and molecular basis remains poorly understood. Here, we investigated this unusual metamorphic program through integrated developmental and RNAi-based analyses. Postembryonic staging confirmed that the 6th instar feeding larva molts into a non-feeding 7th instar prepupa, whose hardened cuticle subsequently serves as the puparium during intra-puparial development. Expression profiles of four key metamorphic genes revealed a stage-specific Chinmo/Kr-h1-Br-c-E93 regulatory shift corresponding to larval, prepupal, and pupal/adult development, with sustained Br-c expression defining the 7th instar prepupal stage. RNAi-mediated knockdown of Kr-h1 and/or Chinmo induced precocious larval-prepupal metamorphosis, supporting their roles in larval stage maintenance, whereas depletion of Br-c or E93 disrupted prepupal-pupal transition and adult differentiation, respectively, consistent with their functions as pupal and adult specifiers. These results support generally conserved functions of the metamorphic gene network while indicating the absence of a repressive effect of Br-c on E93 in H. illucens prepupae. Together, these findings establish the 7th instar prepupa as an independently regulated transitional stage, providing insight into how metamorphic programs are reorganized to diversify life-history strategies in holometabolous insects.

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Getting a head: Evidence for a conserved anterior head patterning gene network in arthropods

Cocker, B. M. J.; Peel, A. D.

2026-04-29 evolutionary biology 10.64898/2026.04.25.720801 medRxiv
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The head of chelicerates, such as spiders, scorpions and mites, is composed of the ocular, chelicerae and pedipalp segments and is considered to be homologous to the procephalon of insects which comprises the ocular, antennal and intercalary segments. Head segmentation in the spider, Parasteatoda tepidariorum, is a dynamic process in which a single stripe of expression of the P. tepidariorum hedgehog (hh) gene splits twice to form three separate stripes, which help pattern the three spider head segments. This dynamic hh stripe splitting process is dependent on spider homologues of the transcription factors orthodenticle (otd) and odd-paired (opa). Here we investigate the conservation of this dynamic patterning mechanism in two insect models: the hemimetabolous pea aphid, Acyrthosiphon pisum, and the holometabolous red flour beetle, Tribolium castaneum.. We show that insect hh, otd and opa homologues are expressed in a highly conserved temporal and spatial pattern during procephalon development in these insects. Our data are consistent with an ancestral insect state in which a single hh stripe splitting event underpins patterning of the ocular and antennal segments, followed by de novo formation of the intercalary hh stripe. Using parental RNAi in T. castaneum, we show that hh, otd and opa homologues exhibit striking similarities in their regulatory interactions during spider and insect head/procephalon segmentation. Our data suggest that hh, otd and opa homologues contribute to an ancient and largely conserved gene network controlling head/procephalon patterning in arthropods. We discuss the implications of these data for our understanding of the origin and evolution of the arthropod head, and propose a new model for the evolution of anterior patterning in holometabolous insects.

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A framework for identifying transcript orthologs: the evolution of sex bias in alternative transcript structure in Drosophila

.Bankole, K.; McIntyre, L.; Garan, M.; Morse, A. M.; Keil, N.; Hernandez, A.; Barmina, O.; Khan, M.; Kopp, A.; Rogers, R.; Graze, R. M.

2026-05-26 genomics 10.64898/2026.05.25.727716 medRxiv
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BackgroundRecent advances in long read technologies provide an unprecedented opportunity to study transcript evolution. However, comparative evolutionary studies, even in Drosophila, are limited by inconsistent and incomplete annotation, and the lack of annotated transcript homology. ResultsIn this study of five species spanning 28 million years (D. melanogaster, D. simulans, D. yakuba, D. santomea and D. serrata), we infer transcript homology using reciprocal liftover, and orthology using network analyses, with data validation from long read RNA-seq of male and female head tissue. We build the first genus level annotation, with 15,996 genes and 56,370 transcripts. Expressed transcripts are conserved, 73% of transcript orthologs are detected in all species. Even the improved annotation underestimates the number of genes with alternative transcripts, with 75% of genes expressing multiple structurally diverse transcripts. In a replicated quantitative evaluation of [~]10,000 genes, both male and female-biased transcripts are expressed in 410 (D. melanogaster), 608 (D. simulans), and 493 (D. serrata) genes and in 118 orthologous genes in the D. melanogaster - D. simulans species pair, indicating greater potential for resolution of sexual conflict by alternative transcription than previously appreciated. We identified 605 transcript orthologs conserved for sex bias in the D. melanogaster-D. simulans species pair and of these, 22 male and 19 female-biased transcripts were conserved in sex bias with the outgroup D. serrata, including transcripts of genes involved in brain development, Sxl target Glutamine synthetase 2 and ciboulot. ConclusionsConserved alternative transcripts suggest that transcriptional diversity is a pervasive driver of the evolution of functional diversity.

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Early Vertebrates Were Not Slow: Rapid Life Histories in Devonian Agnathans

Okabe, N.; Pauly, D.

2026-04-29 paleontology 10.64898/2026.04.26.720944 medRxiv
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Life history strategies such as rapid growth and high population turnover rates observed in vertebrates have been thought to have emerged relatively late in evolution. However, very little direct evidence exists at the species level for early vertebrates. In this study, a large fossil collection of over 450 specimens of Protaspis spp, heterostracan agnathans from the Cottonwood Canyon Formation at Beartooth Butte, Wyoming, from the Early Devonian, was analyzed. Morphological observations, analysis of bone plate completeness, and length-frequency analyses using ELEFAN--commonly used in recent fish studies--were applied to reconstruct growth rates, cohort structure, and ontogenetic processes. Protaspis specimens exhibited a continuous growth series from juvenile to adult stages, and a clear cohort structure was identified from the length-frequency distributions. The ELEFAN analysis suggested a life-history characterized by rapid growth and a short life span, and these features remained consistent in subset analyses restricted by species or locality, confirming the robustness of the estimates. Furthermore, the integration of the dermal bone plates progressed during the late stages of ontogeny, revealing that the rapid growth during the juvenile stage preceded the completion of this defensive structure. Comparisons of their growth parameters with those of extant fishes show that Protaspis does not align with slow-growing, long-lived "living fossil" taxa, but instead clusters with small-bodied, fast-growing species. These findings suggest that life-history strategies involving rapid growth and high population turnover were already established in early jawless vertebrates, much earlier than previously assumed.